Fiscal Year 2004 Awards

National Science Foundation
Plant Genome Research Program
Collaborative Research on Functional Genomics

Principal Investigator

Institution

Title

Total Award ($)

Total Duration (yrs)

Barkan, Alice

0421799

University of Oregon Eugene

Cornell University*

Plant RNA Binding Proteins: Tools for Functional Genomics and Application to Chloroplast Biogenesis

$4,167,531

5

Birchler, James

0423898

University of Missouri – Columbia

Somatic Karyotype Analysis of the Maize Genome

$2,257,237

5

Chen, Z. Jeffrey

0421815

Texas A&M

University of New Orleans*

Genetic and Functional Genomic Analysis of Early Events in Cotton Fiber Development

$2,541,123

5

Cone, Karen

0421619

University of Missouri – Columbia

University of Arizona*

University of Georgia*

University of Minnesota*

University of Wisconsin*

Washington University*

Functional Genomics of Maize Chromatin

$6,644,647

5

Coruzzi, Gloria

0421604

New York University

American Museum of Natural History*

Cold Spring Harbor Laboratory*

New York Botanical Garden*

Genomics of Comparative Seed Evolution

$4,994,588

5

Dawe, R. Kelly

0421671

University of Georgia

University of Hawaii*

University of Missouri – Columbia*

University of Wisconsin*

Functional Genomics of Maize Centromeres

$5,602,932

5

Deng, Xing-Wang

0421675

Yale University

University of California – Davis*

Virtual Center for Analysis of Rice Genome Transcription

$4,409,693

3

Dooner, Hugo

0321494

Rutgers University

A Set of Transgenic Maize Lines for Localized Mutagenesis Based on the Ac-Ds Transposon System

$1,035,558

4

Gantt, James

0421676

University of Minnesota-Twin Cities

Boyce Thompson Institute*

Use of Interfering RNAs to Identify Gene Function in Medicago Truncatula

$2,098,510

4

Hahn, Michael

0421683

University of Georgia

A Monoclonal Antibody Toolkit for Functional Genomics of Plant Cell Walls

$3,876,004

4

Harper, Jeffrey

0321450

The Scripps Research Institute

Prediction and Validation of Phospho-Regulatory Sites in Crop Plant Proteomes

$691,501

2

Kochian, Leon

0419435

Boyce Thompson Institute

Cornell Univesity*

Functional and Comparative Genomic Analysis of Aluminum Tolerance in Maize

$933,490

5

McNellis, Timothy

0420394

Pennsylvania State University

Rootstock-Dependent Gene Expression in Apple Tree Scions

$2,269,246

5

Ming, Ray

0421803

Hawaii Agriculture Research Center

University of Georgia*

University of Wisconsin*

Comparative Genomics of Papaya Chromosomes

$2,896,907

4

Napoli, Carolyn

0421679

University of Arizona

ChromDB: Integrating Information About Plant Chromatin Proteins and Complexes

$1,596,540

4

Peterson, Daniel

0421717

Mississippi State University

Clemson University*

Texas Agricultural Experiment Station*

Accelerating Pine Genomics Through Development and Utilization of Molecular and Cytogenetic Resources

$1,613,915

3

Rieseberg, Loren

0421630

Indiana University

California Polytech – Pomona*

University of California – Davis *

University of Georgia*

University of Massachusetts – Boston*

Comparative Genomics of the Compositae

$5,484,985

3

Stacey, Gary

0421620

University of Missouri-Columbia

Donald Danforth Plant Science Center*

University of Illinois – Urbana-Champaign*

Functional Genomics of Root Hair Infection

$2,500,005

5

Stein, Lincoln

0321685

Cold Spring Harbor Laboratory

Cornell University*

Gramene: A Platform for Comparative Cereal Genomics

$676,202

4

Tanksley, Steven

0421634

Cornell University

Boyce Thompson Institute*

Colorado State University*

Sequence and Annotation of the Euchromatin of Tomato

$4,210,323

2.5

Thompson, William

0421651

North Carolina State University

Clemson University*

Cold Spring Harbor Laboratory*

Global Analysis of Functional Units in Plant Chromosomes: DNA Replication, Domain Structure, and Transcription

$5,133,285

5

Tuskan, Gerald

0421743

University of Tennessee Institute of Agriculture

University of California – Berkeley*

University of Minnesota – Twin Cities*

The Populus Genome Portal

$1,384,814

2

Fiscal Year 2003 Awards

National Science Foundation
Plant Genome Research Program
Collaborative Research on Functional Genomics

Principal Investigator

Institution

Title

Total Award ($)

Total Duration (yrs)

Bass, Henry 

0321639

Florida State University

Cytogenic Map of Maize

$1,548,982

4

Brendel, Volker

0321600

Iowa State University

Plant GDB - Plant Genome Database and Analysis Tools

$978, 683

2

Buell, C. Robin

0321538

The Institute for Genomic Research

An Annotation Resource for the Rice Genome

$4,876,855

4

Burke, John

0332411

Vanderbilt University

YIA: Identifying the Targets of Selection During Sunflower Domestication

$1,111,827

5

Chandler, Vicki

0321663

University of Arizona

The Institute for Genomic Resources (sub)*

University of Wisconsin (sub)*

Microarray Resources for Maize Research

$3,658,458

3

Close, Timothy

0321756

University of California, Riverside

Coupling Expressed Sequences and Bacterial Artificial Chromosome Resources to Access the Barley Genome

$2,433,127

4

Doebley, John

0321467

University of Wisconsin, Madison

Cornell University (sub)*

University of California, Irvine (sub)*

North Carolina State University (sub)*

Molecular and Functional Diversity in the Maize Genome

$10,261,784

5

Dooner, Hugo

0320683

Rutgers University

University of California, Irvine (sub)*

A Comparative Genomics Investigation of Unprecedented Haplotype Variability in Maize

$973,067

4

Dvorak, Jan

0321757

University of California, Davis

Haplotype Polymorphism in the Polyploid Wheats and their Diploid Ancestors

$5,615,748

3

Freeling, Michael

0321726

University of California, Berkeley

Epigenetic Regulation of the Mutator System of Transposons

$986,783

5

Henikoff, Steven

0321510

Fred Hutchinson Cancer Research Center

University of Washington (sub)*

Purdue University (sub)*

Targeting Induced Local Lesions IN Genomes (TILLING) for Plant Functional Genomics

$2,570, 388

3

Innes, Roger

0321664

Indiana University, Bloomington (sub)*

University of Minnesota (sub)*

Cornell University (sub)*

Virginia Tech (sub)*

Oklahoma University (sub)*

Comparative Analysis of Legume Genome Evolution

$2,581,746

3

Kianian, Shahryar

0321462

North Dakota State University

Oregon State University (sub)*

University of Arizona (sub)*

Kansas State University (sub)*

University of California, Davis (sub)*

Development of Diploid Wheat (Triticum Monococcum) Deletion Lines for Reverse Genetics

$1,808,502

2

Klein, Patricia

0321578

Texas A&M University

Map-Based Dissection of Sorghum Drought Tolerance Gene Networks

$1,964,299

4

Korban, Schuyler

0321701

University of Illinois, Urbana-Champaign

Cornell University (sub)*

Purdue University (sub)*

Apple Functional Genomics

$1,659,708

2

Main, Doreen

0320544

Clemson University 

The Prunus Genome Database: A Model for Rosaceae

$646,677

3

McCombie, Richard

0321683

Cold Spring Harbor Laboratory

University of Arizona (sub)*

Finishing the Rice Genome

$4,202,799

3

Meyers, Blake

0321437

University of Delaware

Ohio State University (sub)*

Deep Transcription Profiling of Rice Using Signature Sequencing

$4,195,915

4

Nelson, Timothy

0325821

Yale University

Analysis of Rice Cellular Expression Profiles

$4,492,329

4

Purugganan, Michael

0319553

North Carolina State University

Cornell University (sub)*

Evolutionary Genomics of Rice

$2,573,939

3

Ronald, Pamela

0313887

University of California, Davis

The Institute for Genomic Research (sub)*

Iowa State University (sub)*

A Rice Oligonucleotide Array

$4,367,659

3

Scanlon, Michael

0321595

University of Georgia, Athens

Truman State University (sub)*

Iowa State University (sub)*

Cold Spring Harbor Laboratory (sub)*

Functional Analyses of Genes Involved in Meristem Organization and Leaf Initiation

$3,939,129

4

Schnable, Patrick

0321711

Iowa State University

Truman State University (sub)*

High-Density Genetic Map of Maize Transcripts

$3,691,269

3

Sheridan, William

0321565

University of North Dakota

Global Analysis of the Maize Genome: Relating Genes and DNA Sequence to Chromosome Regions

$300,000

3

Shintani, David

0321690

University of Nevada, Reno

The Functional Identification of Plant Rubber Biosynthetic Genes

$1,992,203

4

Soderlund, Carol

0321724

University of Arizona

University of Georgia (sub)*

Purdue University (sub)*

Techniques for Efficient Finishing and Physical Linkage of Gene Enriched Shotgun Sequences

$1,414,729

2

Stein, Lincoln

0321666

Cold Spring Harbor Labs

Cornell University (sub)*

University of Missouri (sub)*

Carnegie Institution  of Washington (sub)*

The Plant Ontology Consortium

$1,672,411

3

Thelen, Jay

0332418

University of Missouri, Columbia

YIA: Proteomics of Seed-Filling in Oil Seeds

$1,224,667

5

Ware, Doreen

0333074

Cold Spring Harbor Laboratory

YIA: Genomics of Rice, Sorghum and Maize

$1,295,238

5

Wing, Rod

0321678

University of Arizona

Cold Spring Harbor Laboratory (sub)*

Purdue University (sub)*

Oryza Map Alignment Project

$9,743,546

4

Young, Nevin

0321460

University of Minnesota