Fiscal Year 2004 Awards

National Science Foundation
Plant Genome Research Program
Collaborative Research on Functional Genomics

Principal Investigator

Institution

Title

Total Award ($)

Total Duration (yrs)

Barkan, Alice

0421799

University of Oregon Eugene

Cornell University*

Plant RNA Binding Proteins: Tools for Functional Genomics and Application to Chloroplast Biogenesis

$4,167,531

5

Birchler, James

0423898

University of Missouri – Columbia

Somatic Karyotype Analysis of the Maize Genome

$2,257,237

5

Chen, Z. Jeffrey

0421815

Texas A&M

University of New Orleans*

Genetic and Functional Genomic Analysis of Early Events in Cotton Fiber Development

$2,541,123

5

Cone, Karen

0421619

University of Missouri – Columbia

University of Arizona*

University of Georgia*

University of Minnesota*

University of Wisconsin*

Washington University*

Functional Genomics of Maize Chromatin

$6,644,647

5

Coruzzi, Gloria

0421604

New York University

American Museum of Natural History*

Cold Spring Harbor Laboratory*

New York Botanical Garden*

Genomics of Comparative Seed Evolution

$4,994,588

5

Dawe, R. Kelly

0421671

University of Georgia

University of Hawaii*

University of Missouri – Columbia*

University of Wisconsin*

Functional Genomics of Maize Centromeres

$5,602,932

5

Deng, Xing-Wang

0421675

Yale University

University of California – Davis*

Virtual Center for Analysis of Rice Genome Transcription

$4,409,693

3

Dooner, Hugo

0321494

Rutgers University

A Set of Transgenic Maize Lines for Localized Mutagenesis Based on the Ac-Ds Transposon System

$1,035,558

4

Gantt, James

0421676

University of Minnesota-Twin Cities

Boyce Thompson Institute*

Use of Interfering RNAs to Identify Gene Function in Medicago Truncatula

$2,098,510

4

Hahn, Michael

0421683

University of Georgia

A Monoclonal Antibody Toolkit for Functional Genomics of Plant Cell Walls

$3,876,004

4

Harper, Jeffrey

0321450

The Scripps Research Institute

Prediction and Validation of Phospho-Regulatory Sites in Crop Plant Proteomes

$691,501

2

Kochian, Leon

0419435

Boyce Thompson Institute

Cornell Univesity*

Functional and Comparative Genomic Analysis of Aluminum Tolerance in Maize

$933,490

5

McNellis, Timothy

0420394

Pennsylvania State University

Rootstock-Dependent Gene Expression in Apple Tree Scions

$2,269,246

5

Ming, Ray

0421803

Hawaii Agriculture Research Center

University of Georgia*

University of Wisconsin*

Comparative Genomics of Papaya Chromosomes

$2,896,907

4

Napoli, Carolyn

0421679

University of Arizona

ChromDB: Integrating Information About Plant Chromatin Proteins and Complexes

$1,596,540

4

Peterson, Daniel

0421717

Mississippi State University

Clemson University*

Texas Agricultural Experiment Station*

Accelerating Pine Genomics Through Development and Utilization of Molecular and Cytogenetic Resources

$1,613,915

3

Rieseberg, Loren

0421630

Indiana University

California Polytech – Pomona*

University of California – Davis *

University of Georgia*

University of Massachusetts – Boston*

Comparative Genomics of the Compositae

$5,484,985

3

Stacey, Gary

0421620

University of Missouri-Columbia

Donald Danforth Plant Science Center*

University of Illinois – Urbana-Champaign*

Functional Genomics of Root Hair Infection

$2,500,005

5

Stein, Lincoln

0321685

Cold Spring Harbor Laboratory

Cornell University*

Gramene: A Platform for Comparative Cereal Genomics

$676,202

4

Tanksley, Steven

0421634

Cornell University

Boyce Thompson Institute*

Colorado State University*

Sequence and Annotation of the Euchromatin of Tomato

$4,210,323

2.5

Thompson, William

0421651

North Carolina State University

Clemson University*

Cold Spring Harbor Laboratory*

Global Analysis of Functional Units in Plant Chromosomes: DNA Replication, Domain Structure, and Transcription

$5,133,285

5

Tuskan, Gerald

0421743

University of Tennessee Institute of Agriculture

University of California – Berkeley*

University of Minnesota – Twin Cities*

The Populus Genome Portal

$1,384,814

2

Fiscal Year 2003 Awards

National Science Foundation
Plant Genome Research Program
Collaborative Research on Functional Genomics

Principal Investigator

Institution

Title

Total Award ($)

Total Duration (yrs)

Bass, Henry 

0321639

Florida State University

Cytogenic Map of Maize

$1,548,982

4

Brendel, Volker

0321600

Iowa State University

Plant GDB - Plant Genome Database and Analysis Tools

$978, 683

2

Buell, C. Robin

0321538

The Institute for Genomic Research

An Annotation Resource for the Rice Genome

$4,876,855

4

Burke, John

0332411

Vanderbilt University

YIA: Identifying the Targets of Selection During Sunflower Domestication

$1,111,827

5

Chandler, Vicki

0321663

University of Arizona

The Institute for Genomic Resources (sub)*

University of Wisconsin (sub)*

Microarray Resources for Maize Research

$3,658,458

3

Close, Timothy

0321756

University of California, Riverside

Coupling Expressed Sequences and Bacterial Artificial Chromosome Resources to Access the Barley Genome

$2,433,127

4

Doebley, John

0321467

University of Wisconsin, Madison

Cornell University (sub)*

University of California, Irvine (sub)*

North Carolina State University (sub)*

Molecular and Functional Diversity in the Maize Genome

$10,261,784

5

Dooner, Hugo

0320683

Rutgers University

University of California, Irvine (sub)*

A Comparative Genomics Investigation of Unprecedented Haplotype Variability in Maize

$973,067

4

Dvorak, Jan

0321757

University of California, Davis

Haplotype Polymorphism in the Polyploid Wheats and their Diploid Ancestors

$5,615,748

3

Freeling, Michael

0321726

University of California, Berkeley

Epigenetic Regulation of the Mutator System of Transposons

$986,783

5

Henikoff, Steven

0321510

Fred Hutchinson Cancer Research Center

University of Washington (sub)*

Purdue University (sub)*

Targeting Induced Local Lesions IN Genomes (TILLING) for Plant Functional Genomics

$2,570, 388

3

Innes, Roger

0321664

Indiana University, Bloomington (sub)*

University of Minnesota (sub)*

Cornell University (sub)*

Virginia Tech (sub)*

Oklahoma University (sub)*

Comparative Analysis of Legume Genome Evolution

$2,581,746

3

Kianian, Shahryar

0321462

North Dakota State University

Oregon State University (sub)*

University of Arizona (sub)*

Kansas State University (sub)*

University of California, Davis (sub)*

Development of Diploid Wheat (Triticum Monococcum) Deletion Lines for Reverse Genetics

$1,808,502

2

Klein, Patricia

0321578

Texas A&M University

Map-Based Dissection of Sorghum Drought Tolerance Gene Networks

$1,964,299

4

Korban, Schuyler

0321701

University of Illinois, Urbana-Champaign

Cornell University (sub)*

Purdue University (sub)*

Apple Functional Genomics

$1,659,708

2

Main, Doreen

0320544

Clemson University 

The Prunus Genome Database: A Model for Rosaceae

$646,677

3

McCombie, Richard

0321683

Cold Spring Harbor Laboratory

University of Arizona (sub)*

Finishing the Rice Genome

$4,202,799

3

Meyers, Blake

0321437

University of Delaware

Ohio State University (sub)*

Deep Transcription Profiling of Rice Using Signature Sequencing

$4,195,915

4

Nelson, Timothy

0325821

Yale University

Analysis of Rice Cellular Expression Profiles

$4,492,329

4

Purugganan, Michael

0319553

North Carolina State University

Cornell University (sub)*

Evolutionary Genomics of Rice

$2,573,939

3

Ronald, Pamela

0313887

University of California, Davis

The Institute for Genomic Research (sub)*

Iowa State University (sub)*

A Rice Oligonucleotide Array

$4,367,659

3

Scanlon, Michael

0321595

University of Georgia, Athens

Truman State University (sub)*

Iowa State University (sub)*

Cold Spring Harbor Laboratory (sub)*

Functional Analyses of Genes Involved in Meristem Organization and Leaf Initiation

$3,939,129

4

Schnable, Patrick

0321711

Iowa State University

Truman State University (sub)*

High-Density Genetic Map of Maize Transcripts

$3,691,269

3

Sheridan, William

0321565

University of North Dakota

Global Analysis of the Maize Genome: Relating Genes and DNA Sequence to Chromosome Regions

$300,000

3

Shintani, David

0321690

University of Nevada, Reno

The Functional Identification of Plant Rubber Biosynthetic Genes

$1,992,203

4

Soderlund, Carol

0321724

University of Arizona

University of Georgia (sub)*

Purdue University (sub)*

Techniques for Efficient Finishing and Physical Linkage of Gene Enriched Shotgun Sequences

$1,414,729

2

Stein, Lincoln

0321666

Cold Spring Harbor Labs

Cornell University (sub)*

University of Missouri (sub)*

Carnegie Institution  of Washington (sub)*

The Plant Ontology Consortium

$1,672,411

3

Thelen, Jay

0332418

University of Missouri, Columbia

YIA: Proteomics of Seed-Filling in Oil Seeds

$1,224,667

5

Ware, Doreen

0333074

Cold Spring Harbor Laboratory

YIA: Genomics of Rice, Sorghum and Maize

$1,295,238

5

Wing, Rod

0321678

University of Arizona

Cold Spring Harbor Laboratory (sub)*

Purdue University (sub)*

Oryza Map Alignment Project

$9,743,546

4

Young, Nevin

0321460

University of Minnesota

University of Oklahoma (sub)*

The Institute for Genomic Research (sub)*

Sequencing the Gene Space of the Model Legume, Medicago Truncatula

$10,886,431

3

Fiscal Year 2002 Awards
National Science Foundation
Plant Genome Research Program
Collaborative Research on Functional Genomics

Principal Investigator

Institution

Title

Total Award ($)

Total Duration (yrs)

Allison, David
0217651

U of Alabama Birmingham
New York Obesity Res Ctr (sub)*
U of Missouri Rolla (sub)*

Design & Analysis of Microarray Gene Expression Studies in Plants: Toward Sound Statistical Procedures

$2,220,275

4

Baker, Barbara
0218166

U of California Berkeley
Cornell University (sub)*
Institute for Genomic Research (sub)*
U of Minnesota-Twin Cities (sub)*
U of Wisconsin Madison (sub)*

Potato Functional Genomics: Application to Analysis of Growth, Development, Metabolism and Responses to Biotic and Abiotic Stress

$7,618,912

5

Cairney, John
0217594

Inst Paper Sci & Tech
Institute for Genomic Research (sub)*

Genomics of Loblolly Pine Embryogenesis

$1,380,910

3

Carpita, Nicholas
0217552

Purdue University
Colorado State University (sub)*
U of Connecticut (sub)*
U of Florida (sub)*
U of Wisconsin Madison (sub)*

Identification and characterization of cell wall mutants in maize and Arabidopsis using novel spectroscopies

$5,921,989

4

Cramer, Grant
0217653

U of Nevada Reno
VA Polytechnic Inst & State University (sub)*

Integrative Functional Genomic Resource Development in Vitis vinifera: Abiotic Stress and Wine Quality

$3,609,951

4

Dean, Jeffrey
0211807

U of Georgia

Transcriptome Responses to Environmental Conditions in Loblolly Pine Roots

$1,651,752

3

Dinesh-Kumar, Savithramma
0211872

Yale University

Functional Genomics of Host-Virus Interactions

$3,363,177

4

Dooner, Hugo
0211547

Rutgers University

A set of maize transgenic lines for localized mutagenesis based on the Ac-Ds transposon system

$140,612

1

Fromm, Michael
0217312

U of Nebraska Lincoln
U of Arizona (sub)*
U of California Davis (sub)*
U of California San Diego (sub)*
U of Florida (sub)*
U of Missouri Columbia (sub)*

A Protein Interaction Database For Rice Protein Kinases

$6,047,772

4

Galbraith, David
0211857

U of Arizona
U of California Riverside (sub)*

Technology Development: Novel techniques for discovery of patterns of gene regulation within complex eukaryotic tissues

$625,227

2

Henikoff, Steven
0211732

F Hutchinson Cancer Res Ctr
U of Washington (sub)*

Targeting Induced Local Lesions IN Genomes (TILLING) for plant functional genomics

$568,551

1

Kamoun, Sophien
0211659

Ohio State University
National Ctr for Genome Resources (sub)*

Functional Genomics of Phytophthora-Plant Interactions

$1,891,617

4

Keegstra, Kenneth
0211797

Michigan State University

Functional Genomics of Hemicellulose Biosynthesis

$4,945,077

5

Klee, Harry
0211875

U of Florida
Cornell University (sub)*

Functional genomic analysis of fruit flavor and nutrition pathways

$1,159,280

3

McCormick, Sheila
0211742

U of California Berkeley

Functional Analyses of Plant Gamete Gene Expression

$1,135,486

4

Messing, Joachim
0211851

Rutgers University
U of Arizona (sub)*

Sequencing the Maize Genome

$4,291,099

2

Michelmore, Richard
0211923

U of California Davis
U of Chicago (sub)*

Comparative Analysis of Resistance Gene Evolution

$3,031,729

5

Nguyen, Henry
0211842

U of Missouri Columbia
Danforth Plant Sci Center (sub)*
U of Illinois Urbana (sub)*

Functional genomics of root growth and root signaling under drought

$4,549,050

4

Schubert, Karel
0221536

Danforth Plant Sci Center
Institute for Genomic Research (sub)*

Consortium for Maize Genomics

$5,928,755

2

Sundaresan, Venkatesan
0211924

U of California Davis
U of Arizona (sub)*
U of Louisiana at Lafayette (sub)*

Insertional mutagenesis tools for functional genomics in rice

$822,782

3

Tyler, Brett
0211863

VA Polytechnic Inst & State University
Ohio State University (sub)*

Dissecting Phytophthora Resistance in Soybean using Expression Profiling and Analysis of Quantitative Trait Loci

$6,764,462

5

van Wijk, Klaas
0211935

Cornell University
U of Nebraska Lincoln (sub)*

From proplastid to chloroplast: Understanding plastid differentiation in maize through microarray and proteome analysis

$3,827,647

5

Wendel, Jonathan
0211700

Iowa State University
U of Arizona (sub)*
U of Georgia (sub)*

Comparative evolutionary genomics of cotton

$4,197,862

5

Fiscal Year 2002 Awards
National Science Foundation
Plant Genome Research Program
Young Investigator Awards in Plant Genome Research (YIA-PGR)

Principal Investigator

Institution

Title

Total Award ($)

Total Duration (yrs)

Bodganove, Adam
0227357

Iowa State University

YIA-PGR: Genomics of rice susceptibility to bacterial diseases

$1,095,589

5

Gang, David
0227618

U of Arizona

YIA-PGR: Functional Genomics of Plant Metabolism in Model Rhizome Species

$1,114,787

5

Jackson, Scott
0227414

Purdue University

YIA-PGR: Comparative Genomics of Rice: reconstructing rice chromosome 1 in related species

$1,630,537

5

Lawrence, Christopher
0227436

Colorado State University
North Carolina State U (sub)*

YIA-PGR: The Alternaria-Brassicaceae Pathosystem as a Model for Necrotrophic Fungal-Plant Interactions

$1,363,771

4

Springer, Nathan
0227310

U of Wisconsin Madison

YIA-PGR: Assessment of the Use of Oligonucleotide Microarrays for Single Nucleotide Polymorphism Detection in Maize

$450,000

2

Van der Knaap, Ester
0227541

Ohio State University

YIA-PGR: Genetic, molecular and developmental analysis of variation in tomato fruit morphology

$1,109,980

5

Vision, Todd
0227314

U of North Carolina

YIA-PGR: Tools for Plant Comparative Genomics

$1,010,845

5

Weinig, Cynthia
0227103

U of Minnesota-Twin Cities
U of California Davis (sub)*

YIA-PGR: Molecular evolutionary genetics of crop and weed responses to crowding

$1,734,804

5

Fiscal Year 2001 Awards
Plant Genome Research Program
Collaborative Research on Functional Genomics

Principal Investigator

Institution

Title

Total Award ($)

Total Duration (yrs)

Brendel, Volker
0110254

Iowa State University

PlantGDB - Plant Genome Database and Analysis Tools

$158,996

2

Comstock, Jonathan
0110069

Boyce Thompson Institute
Cornell University (sub)*
Oklahoma State University (sub)*

Genomic Analysis of Plant Water Use Efficiency

$3,995,267

4

Cook, Douglas
0110206

University of California Davis
The Institute for Genomic Research (sub)*
The Samuel Roberts Noble Fdn (sub)*
University of Minnesota Twin Cities (sub)*

Towards the Complete Gene Inventory and Function of the Medicago Truncatula Genome

$5,803,691

4

Dean, Ralph
0115642

North Carolina State University
Clemson University (sub)*
Ohio State University (sub)*
Purdue University (sub)*
Texas A&M University (sub)*
University of Arizona (sub)*
University of Kentucky (sub)*

Whole Genome Analysis of Pathogen-Host Recognition and Subsequent Responses in the Rice Blast Patho-System

$5,860,002

4

Delmer, Deborah
0110173

University of California Davis
Alabama A&M University (sub)*
Michigan Technological University (sub)*
Texas Tech University (sub)*
University of Rhode Island (sub)*

Functional Genomics of Cellulose Synthesis in Economically Important Plants

$471,134

1

DePamphilis, Claude
0115684

Pennsylvania State University
Cornell University (sub)*
University of Alabama (sub)*
University of Florida (sub)*
University of Michigan (sub)*

The Floral Genome Project

$7,399,286

5

Drews, Gary
0110035

University of Utah

Gene Targeting in Plants

$1,564,877

3

Hake, Sarah
0110189

University of California Berkeley
Cold Spring Harbor Laboratory (sub)*
Iowa State University (sub)*
University of Illinois Urbana (sub)*
University of Missouri Columbia (sub)*

Regulation of Inflorescence Architecture in Maize

$5,343,199

5

Irish, Vivian
0110115

Yale University

Comparative Genomics of Angiosperm MADS-Box Genes

$435,432

2

Leach, Jan
0110154

Kansas State University
Iowa State University (sub)*
Ohio State University (sub)*
University of California Davis (sub)*

Activation-Tagged and Deletion Mutants and cDNA Microarrays for Functional Genomics of Rice

$500,000

2

Lemaux, Peggy
0110512

University of California Berkeley
Oregon State University (sub)*
USDA-ARS (sub)*

Transposon-Mediated Functional Genomics in Barley

$1,532,663

5

Martienssen, Robert
0110143

Cold Spring Harbor Laboratory

Systematic Transposon Mutagenesis of the Maize Gene Space

$1,990,821

4

McCouch, Susan
0110004

Cornell University

Linking Rice, Arabidopsis and the Grasses to Explore Natural Genetic Variation

$1,365,830

3

Mendes, Pedro
0109732

VA Polytechnic Inst & State University
The Samuel Roberts Noble Fdn (sub)*
South Eastern Oklahoma State U (sub)*

An Integrated Approach to Functional Genomics and Bioinformatics in a Model Legume

$3,587,432

4

Meyers, Blake
0110528

University of California Davis

Signature Sequencing for Quantitative Expression Analysis and Gene Discovery

$952,441

2

Newton, Kathleen
0110168

University of Missouri Columbia
University of Utah (sub)*
Washington University (sub)*

Sequence, Evolution and Expression of Mitochondrial Genomes in the Genus Zea

$2,339,813

3

Ozias-Akins, Peggy
0115911

University of Georgia
Texas A&M University (sub)*

Aligning Physical and Functional Maps of a Genomic Region Spanning the Apomixis Locus by Exploiting Model Cereal Genomics

$1,132,318

4

Paterson, Andrew
0115903

University of Georgia
Clemson University (sub)*
Cornell University (sub)*

Grass Genome Biodiversity: Application of Genomic Tools from Sorghum and Related Grasses to Identify and Analyze Variation in Structure and Function of C4 Grass Genomes

$3,962,498

4

Peterson, Thomas
0110170

Iowa State University

Nested Deletions: A New Tool for Plant Genomics Research

$648,549

3

Phillips, Ronald
0110134

University of Minnesota Twin Cities

A Radiation Hybrid System for the Genetic and Physical Mapping of the Corn Genome

$3,081,245

4

Pratt, Lee
0110140

University of Georgia
Texas A&M University (sub)*

Functional Analysis of the Sorghum Transcriptome

$3,576,195

3

Tanksley, Steven
0116076

Cornell University
Boyce Thompson Institute (sub)*
Clemson University (sub)*

Exploitation of Tomato as a Model for Comparative and Functional Genomics

$6,499,895

5

Thomashow, Michael
0110124

Michigan State University
Ohio State University (sub)*
Oregon State University (sub)*

Low Temperature Regulatory Circuits And Gene Regulons In Higher Plants

$5,072,963

5

Wang, Kan
0110023

Iowa State University
North Carolina State University (sub)*
Purdue University (sub)*
University of Wisconsin Madison (sub)*

Establishment of Robust Maize Transformation Systems

$4,227,981

5

Fiscal Year 2000 Awards
Plant Genome Research Program
Collaborative Research on Functional Genomics

Principal Investigator

Institution

Title

Total Award ($)

Total Duration (yrs)

Barkan, Alice
0077756

U of Oregon Eugene
Boyce Thompson Institute (sub)*
Cornell University (sub)*
U of Nebraska Lincoln (sub)*

Functional Genomics of Chloroplast Biogenesis

$2,732,420

4

Bird, David
0077503

North Carolina State U
Santa Fe Institute (sub)*
U of North Carolina Chapel Hill (sub)*
Washington University (sub)*

Genomic Analysis of a Nematode-plant Interaction: A Tool to Study Plant Biology

$2,607,829

3

Brutnell, Thomas
0076892

Boyce Thompson Institute

Regional Mutagenesis Utilizing Activator (Ac) in Maize

$1,080,370

5

Carpita, Nicholas
0077719

Purdue University
U of Wisconsin Madison (sub)*

A high through-put screen to identify and clone maize and Arabidopsis cell-wall biogenesis related genes

$600,000

2

Collmer, Alan
0077622

Cornell University
Boyce Thompson Institute (sub)*
Institute for Genomic Research (sub)*
Kansas State University (sub)*
U of Missouri Columbia (sub)*
U of Nebraska Lincoln (sub)*

Functional Genomics of the Interactions of Tomato and Pseudomonas syringae pv tomato DC3000

$4,996,022

5

Dinesh-Kumar, Savithramma
0077510

Yale University

Development of Vectors for Virus-Induced Plant Gene Silencing

$635,624

2

Dvorak, Jan
0077766

U of California Davis
Kansas State University (sub)*
Texas A&M University (sub)*

Assessment of the insular organization of the wheat D genome by physical mapping

$4,435,388

4

Estelle, Mark
0077769

U of Texas Austin
Boston University (sub)*
Rice University (sub)*
U of Massachusetts Amherst (sub)*
U of Minnesota Twin Cities (sub)*

Development of New Genetic Resources for Auxin Biology

$1,348,086

3

Guerinot, Mary Lou
0077378

Dartmouth College
Northern Arizona University (sub)*
Scripps research Institute (sub)*
U of Cal San Diego (sub)*
U of Missouri Columbia (sub)*

Gene Discovery in Aid of Plant Nutrition, Human Health and Environmental Remediation

$4,414,644

4

Henikoff, Steven
0077737

Fred Hutchinson Cancer Research Ctr
Institute for Systems Biology (sub)*

Targeting Induced Local Lesions IN Genomes (TILLING) for plant functional genomics

$2,633,390

2

Lam, Eric
0077617

Rutgers University
Cold Spring Harbor Laboratory (sub)*

Chromatin Charting: Organization and dynamics of plant nuclear DNA in situ

$4,326,623

5

McCarty, Donald
0077676

University of Florida
Iowa State University (sub)*
Rutgers University (sub)*
University of Arizona (sub)*

Functional genomics of endosperm development in maize

$4,999,996

5

Mullet, John
0077713

Texas A&M University

Gene Mapping in Sorghum Using Direct Selection Technology

$740,001

3

Osborn, Thomas
0077774

U of Wisconsin Madison
Cold Spring Harbor Laboratory (sub)*
Purdue University (sub)*
Texas A&M University (sub)*
University of Washington (sub)*

Functional Genomics of plant polyploids

$4,996,888

5

Sheen, Jen
0077692

Massachusetts General Hospital
Iowa State University (sub)*

Functional Analysis of Plant Mitogen-activated Protein Kinase Cascades in Stress and Hormone Signaling

$4,559,132

5

Wessler, Susan
0077709

University of Georgia
Cornell University (sub)*
Washington University (sub)*

Transposable Elements in Rice: A Whole Genome Approach

$3,415,866

5

Fiscal Year 1999 Awards
Plant Genome Research Program
Collaborative Research and Infrastructure Projects

Principal
Investigator

Institution

Title

Total Award
($)

Total
Duration
(yrs)

Baker, Barbara
9975866

University of California - Berkeley
Cornell University (sub) *
The Institute for Genomic Research (sub) *
University of Wisconsin (sub) *
University of Minnesota (sub) *

Tools for Potato Structural and Functional Genomics

$5,300,000

3

Bennetzen, Jeffrey
9975793

Purdue University
National Center for Genomic Research (sub) *
University of California - Davis (sub) *
Washington State University (sub) *

Assessment of Gene Content, Colinearity and Evolution in Barley, Maize, Rice, Sorghum and Wheat

$2,008,066

2

Dawe, Kelly
9975827

University of Georgia
University of Missouri (sub) *
University of Wisconsin (sub) *

Functional Genomics of Maize Centromeres

$2,510,000

5

Ecker, Joseph
9975718

University of Pennsylvania
Stanford University (sub) *
University of California - Berkeley (sub) *

Global Expression Studies for the Arabidopsis Genome

$7,600,000

3

Gelvin, Stanton
9975715

Purdue University
SUNY at Buffalo (sub) *
Frederich Miescher Institute (sub) *

Identification of Plant Genes Involved in Agrobacterium-Mediated Transformation

$4,440,751

5

Jorgensen, Richard
9975930

University of Arizona
Johns Hopkins University (sub) *
Purdue University (sub) *
University of Missouri (sub) *
University of Wisconsin (sub) *
Washington University at St. Louis (sub) *

Chromatin-Based Control of Gene Expression in Maize and Arabidopsis

$10,500,000

5

Ketchum, Karen
9975920

The Institute for Genomic Research

High-Density DNA Microarrays for Global Gene Expression Studies in Plants

$2,179,049

3

Messing, Jo
9975618

Rutgers University
Purdue University (sub) *

Colinearity of Maize and Sorghum at the DNA Sequence Level

$3,500,000

4

Michelmore, Richard
9975971

University of California - Davis
Kansas State University (sub) *
University of Wisconsin (sub) *

Functional and Comparative Genomics of Disease Resistance Gene Homologs

$2,530,000

3

Qualset, Calvin
9975989

University of California - State-Wide System
University of California - Davis (sub) *
University of California - Riverside (sub) *
Colorado State University (sub) *
Cornell University (sub) *
Kansas State University (sub) *
North Dakota State University (sub) *
Texas Tech University (sub) *
University of Minnesota (sub) *
University of Missouri (sub) *
University of Nebraska (sub) *
Washington State University (sub) *

Structure and Function of the Expressed Portion of the Wheat Genomes

$7,300,000

4

Raikhel, Natasha
9975815

Michigan State University

Functional Genomics of Hemicellulose Biosynthesis

$2,250,000

3

Schnable, Patrick
9975868

Iowa State University
Jackson Laboratory (sub) *

High-Throughput Mapping Tools for Maize Genomics

$2,947,701

3

Schwartz, David
9975606

University of Wisconsin

Genome-Wide Restriction Map of Rice by Optical Mapping

$1,529,544

3

Sederoff, Ronald
9975806

North Carolina State University
Texas A&M University (sub) *
University of California - Davis (sub) *
University of Minnesota (sub) *
Institute of Paper Technology (sub) *

Genomics of Wood Formation in Loblolly Pine

$4,450,000

3

Walker, John
9975808

University of Missouri
Scripps Institute for Biological Research (sub) *
University of Arizona (sub) *
University of California - San Diego (sub) *
Univesity of Florida (sub) *
University of New Hampshire (sub) *
University of North Carolina (sub) *

Functional Genomics of Plant Phosphorylation

$2,983,734

3

Fiscal Year 1998 Awards
Plant Genome Research Program
Collaborative Research and Infrastructure Projects

Principal
Investigator

Institution

Title

Total Award
($)

Total
Duration
(yrs)

Bohnert, Hans J.
9813360

University of Arizona
Purdue University (sub) *
Oklahoma State University (sub)

Genomics of Plant Stress Tolerance

$8,270,704

4

Cande, W. Zacheus
9813365

University of California - Berkeley

An Integrated Map of Cytological,
Genetic and Physical Information
of Maize

$762,977

4

Coe, Edward H.
9872655

University of Missouri
University of Georgia (sub)
Clemson University (sub)

Comprehensive Genetic, Physical,
and Database Resource for
Maize

$11,075,485

5

Cook, Douglas
9872664

Texas A&M University
University of Georgia (sub)
University of Minnestoa (sub)

Medicago truncatula as the Nodal
Species for Comparative and
Functional Legume Genomics

$3,440,561

3

Delmer, Deborah P.
9872627

University of California - Davis
Texas Tech University (sub)

Comparative Functional
Genomics of the ceIA Gene
Family in Plants

$819,818

3

Doebley, John F.
9872631

University of Minnesota
North Carolina State University (sub)
University of California - Irvine (sub)

Evolutionary Genomics of Maize

$5,847,106

5

Dooner, Hugo K.
9813364

Rutgers University

Use of the Transposon AC
as a Gene-Searching Engine
in the Maize Genome

$1,334,173

3

Fedoroff, Nina V.
9872629

Pennsylvania State University

New DNA Microarray Detection
Techniques in the Study
of Stress-Induced Changes in
Plant Gene Expression

$1,801,988

3

Green, Pamela J.
9872638

Michigan State University
Carnegie Institution of Washington (sub)
Stanford University (sub)
Yale University (sub)
University of Wisconsin (sub)

A Functional Analysis of the
Arabidopsis Genome via
Gene Disruption and Global
Gene Expression Analysis

$8,700,000

3

Lam, Eric
9872636

Rutgers University

Chromatic Charting: Organization
and Dynamics of Plant
Nuclear DNA in situ

$676,234

2

Lemieux, Bertrand
9872677

University of Delaware
University of Illinois - Urbana (sub)
Massachusetts General Hospital (sub)

Genomic Analysis of Seed
Quality Traits in Corn

$2,197,783

3

Lightfoot, David A.
9872635

Southern Illinois University
Texas A&M University (sub)

Integrative Physical Mapping
of the Soybean Genome

$1,303,664

3

Martienssen, Robert
9872644

Cold Spring Harbor Laboratory
University of California - Berkeley (sub)

Center for Comparative
Genomics in Model and Crop
Plants

$1,842,208

3

Phillips, Ronald L.
9872650

University of Minnesota

A Radiation Hybrid and Cloning
System for the Genetic and
Physical Mapping of the
Corn Genome

$1,830, 669

3

Pratt, Lee
9872649

University of Georgia
Cornell University (sub)
Clemson University (sub)

Cross-Linked Sorghum and
Rice Physical Maps as a
Foundation for Analyzing Genome
Structure, Function, and
Variation in C4 Grasses

$3,247,755

3

Preuss, Daphne K.
9872641

University of Chicago
Texas A&M University (sub)

Plant Centromere Functions
Defined by Tetrad Analysis and
Artificial Chromosomes

$2,274,211

5

Sung, Z. Renee
9813361

University of California - Berkeley

Repackaging the Corn Genome
for Molecular Mapping

$301,072

2

Tanksley, Steven D.
9872617

Cornell University
Boyce Thompson Institute (sub)
Texas A&M University (sub)

Development of Tools for Tomato
Functional Genomics: Application
to Analysis of Fruit Development,
Responses to Pathogens,
and Genome Synteny With
Arabidopsis

$4,648,484

3

Venter, Craig
9813392

The Institute of Genomic Research

Generation of a Tomato
EST Database

$3,246,725

3

Vodkin, Lila O.
9872565

University of Illinois - Urbana
Iowa State University (sub)
University of Missouri (sub)
University of Minnesota (sub)
Northern Arizona University (sub)

A Functional Genomics
Program for Soybean

$4,460,359

4

Walbot, Virginia
9872657

Stanford University
University of Arizona (sub)
University of California - Berkeley (sub)
University of California - San Diego (sub)
University of Illinois - Urbana (sub)
Iowa State University (sub)

Maize Gene Discovery,
Sequencing, and Phenotypic Analysis

$12,548,370

5

Wilkins, Thea A.
9872630

University of California Davis
University of Georgia (sub)
Texas Tech University (sub)
Iowa State University (sub)
Clemson University (sub)

Structure and Function
of the Cotton Genome: An
Integrated Analysis of
the Genetics, Development and
Evolution of the Cotton
Fiber

$3,800,001

3

Wing, Rod A.
9872676

Clemson University

A BAC Library Resource
for Crop Genomics

$616,521

5