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News Release 13-095

Cracking the Code of HIV; Providing An Up-Close View of the Enemy

Supercomputer empowers researchers to answer the 64-million-atom question by running detailed simulations of HIV

Atomic-level detailed simulations of the HIV capsid.

Three different renderings of the HIV capsid, with multiple colors.


May 29, 2013

This material is available primarily for archival purposes. Telephone numbers or other contact information may be out of date; please see current contact information at media contacts.

Researchers have determined the precise chemical structure of the HIV capsid, a protein shell that protects the virus's genetic material and is a key to its ability to infect and debilitate the human body's defense mechanism. Detailed simulations were achieved with the use of a supercomputer on a 64 million atom sample. The capsid has become an attractive target for the development of new antiretroviral drugs that suppress the HIV virus and stop the progression of AIDS.

The research paper describing these results is the cover story of this week's journal Nature (May 30, 2013).

This discovery was enabled by a recently-dedicated, new supercomputer called Blue Waters, one of the world's most powerful computers. Until the arrival of petascale supercomputers, scientists were unable to decipher in atomic-level detail the entire HIV capsid--an assemblage of more than 1,300 identical proteins forming a cone-shaped structure. The simulations that added the missing pieces to the puzzle were conducted during testing of Blue Waters at the National Center for Supercomputing Applications at the University of Illinois at Urbana-Champaign (UIUC).

"The sustained petascale performance of Blue Waters is precisely what enabled these talented researchers to explore new methods combined with structural and electron microscopy data to reliably model the chemical structure of the HIV capsid in great detail," said Irene Qualters, NSF program manager for Advanced Cyberinfrastructure. "This knowledge will allow researchers to infiltrate that membrane with HIV-fighting drugs."

UIUC Physics Professor Klaus Schulten, his post postdoctoral researcher Juan R. Perilla, and NSF's Qualters discussed this discovery with reporters during an embargoed, webcasted press conference on May 28, 2013.

A video, Targeting the HIV Virus: Researchers Use Supercomputer to Solve the Structure, tells the story of this research.

More information is available in the UIUC press release, Wit, Grit and a Supercomputer Yield Chemical Structure of HIV Capsid.

-NSF-

Media Contacts
 Diana Yates, UIUC, (217) 333-5802, email: diya@illinois.edu
Lisa-Joy Zgorski, NSF, (703) 292-8311, email: lisajoy@nsf.gov

Principal Investigators
 Klaus Schulten, UIUC, email: kschulte@ks.uiuc.edu

Co-Investigators
 Juan R. Perilla, UIUC, email: juan@ks.uiuc.edu

Related Websites
Computer Simulations Help Scientists Understand HIV-1 Infection, news from the University of Central Florida: http://today.ucf.edu/computer-simulations-help-scientists-understand-hiv-1-infection/

The U.S. National Science Foundation propels the nation forward by advancing fundamental research in all fields of science and engineering. NSF supports research and people by providing facilities, instruments and funding to support their ingenuity and sustain the U.S. as a global leader in research and innovation. With a fiscal year 2023 budget of $9.5 billion, NSF funds reach all 50 states through grants to nearly 2,000 colleges, universities and institutions. Each year, NSF receives more than 40,000 competitive proposals and makes about 11,000 new awards. Those awards include support for cooperative research with industry, Arctic and Antarctic research and operations, and U.S. participation in international scientific efforts.

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